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Introduction to single cell RNA sequencing data analysis
🌐 90 Days
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- Anchored-fusion enables targeted fusion search in bulk and single-cell RNA sequencing data
- Comparative Analysis of Single-Cell RNA Sequencing Methods with and without Sample Multiplexing
- Transcriptomics of Human Brain Tissue in Parkinson's Disease: a Comparison of Bulk and Single-cell RNA Sequencing
- Multiscale approaches for understanding single cell spatial omics data
- Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
- Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
- A single-cell and spatial RNA-seq database for Alzheimer's disease (ssREAD)
- Analysis and Visualization of Single-Cell Sequencing Data with Scanpy and MetaCell: A Tutorial
- Proteomic analysis of pleomorphic dermal sarcoma reveals a fibroblastic cell of origin and distinct immune evasion mechanisms
- Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
- Advancements in Single-Cell RNA Sequencing Research for Neurological Diseases
- Haploinsufficiency of phosphodiesterase 10A activates PI3K/AKT signaling independent of PTEN to induce an aggressive glioma phenotype
- Detection of circulating tumor cells by means of machine learning using Smart-Seq2 sequencing
- Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique
- Molecular cascades and cell type-specific signatures in ASD revealed by single-cell genomics
- Molecular cascades and cell type-specific signatures in ASD revealed by single-cell genomics
- FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
- Characterizing dysregulations via cell-cell communications in Alzheimer's brains using single-cell transcriptomes
- Ocean to Tree: Leveraging Single-Molecule RNA-Seq to Repair Genome Gene Models and Improve Phylogenomic Analysis of Gene and Species Evolution
- Single-cell RNA-seq reveals the role of YAP1 in prefrontal cortex microglia in depression
- Artificial intelligence-assisted automatic and index-based microbial single-cell sorting system for One-Cell-One-Tube
- Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors
- Single-cell RNA-seq data analysis reveals functionally relevant biomarkers of early brain development and their regulatory footprints in human embryonic stem cells (hESCs)
- Library size confounds biology in spatial transcriptomics data
- Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a Drosophila knock-in tauopathy model
- Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data
- Clinically unfavorable transcriptome subtypes of non-WNT/non-SHH medulloblastomas are associated with a predominance in proliferating and progenitor-like cell subpopulations
- Clinically unfavorable transcriptome subtypes of non-WNT/non-SHH medulloblastomas are associated with a predominance in proliferating and progenitor-like cell subpopulations
- Single-Cell Nuclear Sequencing Atlas Revealed the Induction of Parkinson's Disease by RELN+ Neuron 3 and the Gene Regulatory Network of MSRA
- Osteopontin drives neuroinflammation and cell loss in MAPT-N279K frontotemporal dementia patient neurons
- Single cell RNA sequencing reveals immunomodulatory mechanism of stem cell factor and granulocyte colony-stimulating factor treatment in the brains of aged APP/PS1 mice
- Machine learning algorithms integrate bulk and single-cell RNA data to unveil oxidative stress following intracerebral hemorrhage
- HPV16-miRNAs exert oncogenic effects through enhancers in human cervical cancer
- Spatial genomics: mapping human steatotic liver disease
- Spatially Resolved Single-Cell Omics: Methods, Challenges, and Future Perspectives
- Unveiling the role of disulfidptosis-related genes in the pathogenesis of non-alcoholic fatty liver disease
- The Clinical Utility of a Tiered Approach to Pediatric Glioma Molecular Characterization for Resource-Limited Settings
- Transcriptomic Evaluation of a Stress Vulnerability Network using Single Cell RNA-Seq in mouse Prefrontal Cortex
- Antitumor efficacy and potential mechanism of FAP-targeted radioligand therapy combined with immune checkpoint blockade
- Therapeutic potential of targeting Nrf2 by panobinostat in pituitary neuroendocrine tumors
- Characterisation of premature cell senescence in Alzheimer's disease using single nuclear transcriptomics
- Single-Cell Data Analysis Reveals Critical Hepatic Cells Subpopulations in the Progression of Non-alcoholic Fatty Liver Disease to Non-Alcoholic Steatohepatitis
- Single-cell transcriptomic analysis of decidual immune cell landscape in the occurrence of adverse pregnancy outcomes induced by Toxoplasma gondii infection
- Single-cell transcriptomic analysis of decidual immune cell landscape in the occurrence of adverse pregnancy outcomes induced by Toxoplasma gondii infection
- Integrating Bulk RNA and Single-Cell Sequencing Data Unveils Efferocytosis Patterns and ceRNA Network in Ischemic Stroke
- Dissecting Parkinson's disease with long-read RNA-sequencing
- Drugs of abuse hijack a mesolimbic pathway that processes homeostatic need
- Hofbauer cells and fetal brain microglia share transcriptional profiles and responses to maternal diet-induced obesity
- Hofbauer cells and fetal brain microglia share transcriptional profiles and responses to maternal diet-induced obesity
- SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics
- Single-cell genomics and regulatory networks for 388 human brains
- Single-cell genomics and regulatory networks for 388 human brains
- Single-cell genomics and regulatory networks for 388 human brains
- Protein Research Seminar
- LINC00894 inhibited neuron cellular apoptosis and regulated activating transcription factor 3 expression
- Systematic analysis of RNA-binding proteins identifies targetable therapeutic vulnerabilities in osteosarcoma
- Supermultipotency and unpredictability in the developing superior colliculus
- Single-Cell Multi-Omics Map of Cell Type-Specific Mechanistic Drivers of Multiple Sclerosis Lesions
- Detecting differential transcript usage in complex diseases with SPIT
- Systems biology dissection of PTSD and MDD across brain regions, cell types, and blood
- Omics approaches to investigate the pathogenesis of suicide
- scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network
- Accurate and comprehensive evaluation of O6-methylguanine-DNA methyltransferase promoter methylation by nanopore sequencing
- The microtubule targeting agent ST-401 triggers cell death in interphase and prevents the formation of polyploid giant cancer cells
Evidence Blueprint
Introduction to single cell RNA sequencing data analysis
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Introduction to single cell RNA sequencing data analysis
🌐 365 Days
AI Virtual Reality Related Evidence Matrix
- Single-Nucleus RNA-Sequencing in Brain Tissue
- A targeted sequencing extension for transcript genotyping in single-cell transcriptomics
- Anchored-fusion enables targeted fusion search in bulk and single-cell RNA sequencing data
- Full-length single-cell RNA-sequencing: From short to long-reads
- Comparative Analysis of Single-Cell RNA Sequencing Methods with and without Sample Multiplexing
- Transcriptomics of Human Brain Tissue in Parkinson's Disease: a Comparison of Bulk and Single-cell RNA Sequencing
- Single-Cell RNA-Sequencing in Astrocyte Development, Heterogeneity, and Disease
- Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
- Multiscale approaches for understanding single cell spatial omics data
- Advance and Application of Single-cell Transcriptomics in Auditory Research
- Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
- Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
- hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
- Human γδ T cell Identification from Single-cell RNA Sequencing Datasets by Modular TCR Expression
- A single-cell and spatial RNA-seq database for Alzheimer's disease (ssREAD)
- Analysis and Visualization of Single-Cell Sequencing Data with Scanpy and MetaCell: A Tutorial
- Dissecting viral infections, one cell at a time, by single-cell technologies
- Single-cell RNA sequencing uncovers the cell type-dependent transcriptomic changes in the retrosplenial cortex after peripheral nerve injury
- Proteomic analysis of pleomorphic dermal sarcoma reveals a fibroblastic cell of origin and distinct immune evasion mechanisms
- Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
- Differential variability analysis of single-cell gene expression data
- Hemocyte Nuclei Isolation from Adult Drosophila melanogaster for snRNA-seq
- The role of NF-κB signaling pathway in reactive astrocytes among neurodegeneration after methamphetamine exposure by integrated bioinformatics
- Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry
- Advancements in Single-Cell RNA Sequencing Research for Neurological Diseases
- Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons
- Isolation and profiling of viable tumor cells from human ex vivo glioblastoma cultures through single-cell transcriptomics
- Haploinsufficiency of phosphodiesterase 10A activates PI3K/AKT signaling independent of PTEN to induce an aggressive glioma phenotype
- Detection of circulating tumor cells by means of machine learning using Smart-Seq2 sequencing
- Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique
- Slide-tags enables single-nucleus barcoding for multimodal spatial genomics
- Single-cell RNA sequencing reveals diverse B cell phenotypes in patients with anti-NMDAR encephalitis
- Molecular cascades and cell type-specific signatures in ASD revealed by single-cell genomics
- Molecular cascades and cell type-specific signatures in ASD revealed by single-cell genomics
- Single-cell transcriptomic sequencing identifies subcutaneous patient-derived xenograft recapitulated medulloblastoma
- Single-Cell Transcriptomics and In Vitro Lineage Tracing Reveals Differential Susceptibility of Human iPSC-Derived Midbrain Dopaminergic Neurons in a Cellular Model of Parkinson's Disease
- An overview of human single-cell RNA sequencing studies in neurobiological disease
- ASCL1 induces neurogenesis in human Müller glia
- FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
- METTL3 drives NAFLD-related hepatocellular carcinoma and is a therapeutic target for boosting immunotherapy
- Deciphering early human pancreas development at the single-cell level
- Characterizing dysregulations via cell-cell communications in Alzheimer's brains using single-cell transcriptomes
- Cell-type deconvolution of bulk-blood RNA-seq reveals biological insights into neuropsychiatric disorders
- High throughput functional profiling of genes at intraocular pressure loci reveals distinct networks for glaucoma
- Ocean to Tree: Leveraging Single-Molecule RNA-Seq to Repair Genome Gene Models and Improve Phylogenomic Analysis of Gene and Species Evolution
- Cell-type composition affects adipose gene expression associations with cardiometabolic traits
- Single-cell RNA-seq reveals the role of YAP1 in prefrontal cortex microglia in depression
- Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
- Artificial intelligence-assisted automatic and index-based microbial single-cell sorting system for One-Cell-One-Tube
- Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors
- Expression Atlas update: insights from sequencing data at both bulk and single cell level
- Common mitochondrial deletions in RNA-Seq: evaluation of bulk, single-cell, and spatial transcriptomic datasets
- Single-cell RNA-seq data analysis reveals functionally relevant biomarkers of early brain development and their regulatory footprints in human embryonic stem cells (hESCs)
- Library size confounds biology in spatial transcriptomics data
- A chemist’s adventures in immunology: Probing the T-cell activation pathway at the single cell and single molecule-level with n...
- Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a Drosophila knock-in tauopathy model
- Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data
- Single-Nucleus Transcriptome Profiling of Dorsolateral Prefrontal Cortex: Mechanistic Roles for Neuronal Gene Expression, Including the 17q21.31 Locus, in PTSD Stress Response
- A single-nucleus transcriptome-wide association study implicates novel genes in depression pathogenesis
- Clinically unfavorable transcriptome subtypes of non-WNT/non-SHH medulloblastomas are associated with a predominance in proliferating and progenitor-like cell subpopulations
- Clinically unfavorable transcriptome subtypes of non-WNT/non-SHH medulloblastomas are associated with a predominance in proliferating and progenitor-like cell subpopulations
- Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes
- TrkB-dependent regulation of molecular signaling across septal cell types
- Single-Cell Nuclear Sequencing Atlas Revealed the Induction of Parkinson's Disease by RELN+ Neuron 3 and the Gene Regulatory Network of MSRA