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Introduction to single cell RNA sequencing data analysis
🌐 90 Days
VR Related Evidence Matrix
- Anchored-fusion enables targeted fusion search in bulk and single-cell RNA sequencing data
- Comparative Analysis of Single-Cell RNA Sequencing Methods with and without Sample Multiplexing
- Transcriptomics of Human Brain Tissue in Parkinson's Disease: a Comparison of Bulk and Single-cell RNA Sequencing
- Analysis and Visualization of Single-Cell Sequencing Data with Scanpy and MetaCell: A Tutorial
- Advancements in Single-Cell RNA Sequencing Research for Neurological Diseases
- Haploinsufficiency of phosphodiesterase 10A activates PI3K/AKT signaling independent of PTEN to induce an aggressive glioma phenotype
- Detection of circulating tumor cells by means of machine learning using Smart-Seq2 sequencing
- Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique
- Single-cell transcriptomic sequencing identifies subcutaneous patient-derived xenograft recapitulated medulloblastoma
- FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
- Characterizing dysregulations via cell-cell communications in Alzheimer's brains using single-cell transcriptomes
- Ocean to Tree: Leveraging Single-Molecule RNA-Seq to Repair Genome Gene Models and Improve Phylogenomic Analysis of Gene and Species Evolution
- Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors
- Single-cell RNA-seq data analysis reveals functionally relevant biomarkers of early brain development and their regulatory footprints in human embryonic stem cells (hESCs)
- Library size confounds biology in spatial transcriptomics data
- Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a Drosophila knock-in tauopathy model
- Single-Cell Nuclear Sequencing Atlas Revealed the Induction of Parkinson's Disease by RELN+ Neuron 3 and the Gene Regulatory Network of MSRA
- Osteopontin drives neuroinflammation and cell loss in MAPT-N279K frontotemporal dementia patient neurons
- Single cell RNA sequencing reveals immunomodulatory mechanism of stem cell factor and granulocyte colony-stimulating factor treatment in the brains of aged APP/PS1 mice
- HPV16-miRNAs exert oncogenic effects through enhancers in human cervical cancer
- Spatial genomics: mapping human steatotic liver disease
- Spatially Resolved Single-Cell Omics: Methods, Challenges, and Future Perspectives
- The Clinical Utility of a Tiered Approach to Pediatric Glioma Molecular Characterization for Resource-Limited Settings
- Therapeutic potential of targeting Nrf2 by panobinostat in pituitary neuroendocrine tumors
- Characterisation of premature cell senescence in Alzheimer's disease using single nuclear transcriptomics
- Single-cell transcriptomic analysis of decidual immune cell landscape in the occurrence of adverse pregnancy outcomes induced by Toxoplasma gondii infection
- Single-cell transcriptomic analysis of decidual immune cell landscape in the occurrence of adverse pregnancy outcomes induced by Toxoplasma gondii infection
- Integrating Bulk RNA and Single-Cell Sequencing Data Unveils Efferocytosis Patterns and ceRNA Network in Ischemic Stroke
- Dissecting Parkinson's disease with long-read RNA-sequencing
- Drugs of abuse hijack a mesolimbic pathway that processes homeostatic need
- Protein Research Seminar
- Systematic analysis of RNA-binding proteins identifies targetable therapeutic vulnerabilities in osteosarcoma
- Supermultipotency and unpredictability in the developing superior colliculus
- Single-Cell Multi-Omics Map of Cell Type-Specific Mechanistic Drivers of Multiple Sclerosis Lesions
- Detecting differential transcript usage in complex diseases with SPIT
- scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network
- Unraveling the connection between Hashimoto's Thyroiditis and non-alcoholic fatty liver disease: exploring the role of CD4(+)central memory T cells through integrated genetic approaches
- The microtubule targeting agent ST-401 triggers cell death in interphase and prevents the formation of polyploid giant cancer cells
- Identifying Hmga2 preserving visual function by promoting a shift of Müller glia cell fate in mice with acute retinal injury
- Identifying Hmga2 preserving visual function by promoting a shift of Müller glia cell fate in mice with acute retinal injury
- Autoimmunity Against Surfactant Protein B Is Associated with Pneumonitis During Checkpoint Blockade
- Spatiotemporal transcriptomic changes of human ovarian aging and the regulatory role of FOXP1
- Mechanisms of sex differences in Alzheimer's disease
- Protective effect of PDE4B subtype-specific inhibition in an App knock-in mouse model for Alzheimer's disease
- Transcriptional signatures of fentanyl use in the mouse ventral tegmental area
- Single-Nucleus Transcriptome Profiling from the Hippocampus of a PTSD Mouse Model and CBD-Treated Cohorts
- Ensemble Learning for Higher Diagnostic Precision in Schizophrenia Using Peripheral Blood Gene Expression Profile
- scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding
- Single-nucleus RNA sequencing demonstrates an autosomal dominant Alzheimer's disease profile and possible mechanisms of disease protection
- Glioblastoma-instructed microglia transition to heterogeneous phenotypic states with phagocytic and dendritic cell-like features in patient tumors and patient-derived orthotopic xenografts
- Insights for disease modeling from single-cell transcriptomics of iPSC-derived Ngn2-induced neurons and astrocytes across differentiation time and co-culture
- Loss of GPR75 protects against non-alcoholic fatty liver disease and body fat accumulation
- Ocular A-to-I RNA editing signatures associated with SARS-CoV-2 infection
- Longitudinal analysis of CSF HIV RNA in untreated people with HIV: Identification of CSF controllers
- ARID5B is a negative modulator of IL-6 production in rheumatoid arthritis synovial fibroblasts
- Integrative analysis identifies oxidative stress biomarkers in non-alcoholic fatty liver disease via machine learning and weighted gene co-expression network analysis
- Transcriptomic characterization of human lateral septum neurons reveals conserved and divergent marker genes across species
- Differential expression analysis identifies candidate synaptogenic molecules for wiring direction-selective circuits in the retina
- G-protein coupled estrogen receptor 1, amyloid-β, and tau tangles in older adults
- Trans Species RNA Activity: Sperm RNA of the Father of an Autistic Child Programs Glial Cells and Behavioral Disorders in Mice
- EpiDiP/NanoDiP: a versatile unsupervised machine learning edge computing platform for epigenomic tumour diagnostics
- Ketogenic diet modifies ribosomal protein dysregulation in KMT2D Kabuki syndrome
- HIV/HBV co-infection remodels the immune landscape and Natural Killer cell ADCC functional responses
- Hepatitis B virus particles in serum contain minus strand DNA and degraded pregenomic RNA of variable and inverse lengths
Evidence Blueprint
Introduction to single cell RNA sequencing data analysis
☊ AI-Driven Related Evidence Nodes
(recent articles with at least 5 words in title)
More Evidence
Introduction to single cell RNA sequencing data analysis
🌐 365 Days
VR Related Evidence Matrix
- Single-Nucleus RNA-Sequencing in Brain Tissue
- A targeted sequencing extension for transcript genotyping in single-cell transcriptomics
- Anchored-fusion enables targeted fusion search in bulk and single-cell RNA sequencing data
- Full-length single-cell RNA-sequencing: From short to long-reads
- Comparative Analysis of Single-Cell RNA Sequencing Methods with and without Sample Multiplexing
- Transcriptomics of Human Brain Tissue in Parkinson's Disease: a Comparison of Bulk and Single-cell RNA Sequencing
- Single-Cell RNA-Sequencing in Astrocyte Development, Heterogeneity, and Disease
- Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
- Advance and Application of Single-cell Transcriptomics in Auditory Research
- hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
- Human γδ T cell Identification from Single-cell RNA Sequencing Datasets by Modular TCR Expression
- Analysis and Visualization of Single-Cell Sequencing Data with Scanpy and MetaCell: A Tutorial
- Dissecting viral infections, one cell at a time, by single-cell technologies
- Single-cell RNA-sequencing analysis reveals enhanced non-canonical neurotrophic factor signaling in the subacute phase of traumatic brain injury
- Single-cell RNA sequencing uncovers the cell type-dependent transcriptomic changes in the retrosplenial cortex after peripheral nerve injury
- Differential variability analysis of single-cell gene expression data
- The role of NF-κB signaling pathway in reactive astrocytes among neurodegeneration after methamphetamine exposure by integrated bioinformatics
- Hemocyte Nuclei Isolation from Adult Drosophila melanogaster for snRNA-seq
- Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry
- Advancements in Single-Cell RNA Sequencing Research for Neurological Diseases
- Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons
- Isolation and profiling of viable tumor cells from human ex vivo glioblastoma cultures through single-cell transcriptomics
- Haploinsufficiency of phosphodiesterase 10A activates PI3K/AKT signaling independent of PTEN to induce an aggressive glioma phenotype
- Detection of circulating tumor cells by means of machine learning using Smart-Seq2 sequencing
- Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique
- Slide-tags enables single-nucleus barcoding for multimodal spatial genomics
- Single-cell RNA sequencing reveals diverse B cell phenotypes in patients with anti-NMDAR encephalitis
- Single-cell transcriptomic sequencing identifies subcutaneous patient-derived xenograft recapitulated medulloblastoma
- Single-Cell Transcriptomics and In Vitro Lineage Tracing Reveals Differential Susceptibility of Human iPSC-Derived Midbrain Dopaminergic Neurons in a Cellular Model of Parkinson's Disease
- An overview of human single-cell RNA sequencing studies in neurobiological disease
- ASCL1 induces neurogenesis in human Müller glia
- FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
- Single-cell RNA sequencing reveals sexual diversity in the human bladder and its prospective impacts on bladder cancer and urinary tract infection
- METTL3 drives NAFLD-related hepatocellular carcinoma and is a therapeutic target for boosting immunotherapy
- Deciphering early human pancreas development at the single-cell level
- Characterizing dysregulations via cell-cell communications in Alzheimer's brains using single-cell transcriptomes
- Cell-type deconvolution of bulk-blood RNA-seq reveals biological insights into neuropsychiatric disorders
- High throughput functional profiling of genes at intraocular pressure loci reveals distinct networks for glaucoma
- Ocean to Tree: Leveraging Single-Molecule RNA-Seq to Repair Genome Gene Models and Improve Phylogenomic Analysis of Gene and Species Evolution
- Cell-type composition affects adipose gene expression associations with cardiometabolic traits
- Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
- Expression Atlas update: insights from sequencing data at both bulk and single cell level
- Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors
- Single-cell RNA-seq data analysis reveals functionally relevant biomarkers of early brain development and their regulatory footprints in human embryonic stem cells (hESCs)
- Common mitochondrial deletions in RNA-Seq: evaluation of bulk, single-cell, and spatial transcriptomic datasets
- Library size confounds biology in spatial transcriptomics data
- Cell type deconvolution of bulk blood RNA-Seq to reveal biological insights of neuropsychiatric disorders
- A chemist’s adventures in immunology: Probing the T-cell activation pathway at the single cell and single molecule-level with n...
- Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a Drosophila knock-in tauopathy model
- Single-Nucleus Transcriptome Profiling of Dorsolateral Prefrontal Cortex: Mechanistic Roles for Neuronal Gene Expression, Including the 17q21.31 Locus, in PTSD Stress Response
- A single-nucleus transcriptome-wide association study implicates novel genes in depression pathogenesis
- Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes
- TrkB-dependent regulation of molecular signaling across septal cell types
- Single-Cell Nuclear Sequencing Atlas Revealed the Induction of Parkinson's Disease by RELN+ Neuron 3 and the Gene Regulatory Network of MSRA
- Transition to Chronic Fibrosis in an Animal Model of Retinal Detachment With Features of Proliferative Vitreoretinopathy
- Osteopontin drives neuroinflammation and cell loss in MAPT-N279K frontotemporal dementia patient neurons
- Characteristics of T Cells in Single-Cell Datasets of Peripheral Blood and Cerebrospinal Fluid in Alzheimer's Disease Patients
- Multiomic spatial landscape of innate immune cells at human central nervous system borders
- CHRNA5 links chandelier cells to severity of amyloid pathology in aging and Alzheimer's disease
- MAPK inhibitor sensitivity scores predict sensitivity driven by the immune infiltration in pediatric low-grade gliomas
- Single cell RNA sequencing reveals immunomodulatory mechanism of stem cell factor and granulocyte colony-stimulating factor treatment in the brains of aged APP/PS1 mice
- HPV16-miRNAs exert oncogenic effects through enhancers in human cervical cancer
- Sex and cell-specific gene expression in corticolimbic brain regions associated with psychiatric disorders revealed by bulk and single-nuclei RNA sequencing
- Single-cell brain organoid screening identifies developmental defects in autism